LICENSE.txt
README.rst
setup.py
cfDNApipe/Configure.py
cfDNApipe/Configure2.py
cfDNApipe/Fun_BQSR.py
cfDNApipe/Fun_CNV.py
cfDNApipe/Fun_DMR.py
cfDNApipe/Fun_GCcorrect.py
cfDNApipe/Fun_OCF.py
cfDNApipe/Fun_OCFplot.py
cfDNApipe/Fun_PCA.py
cfDNApipe/Fun_WPS.py
cfDNApipe/Fun_adapterremoval.py
cfDNApipe/Fun_addRG.py
cfDNApipe/Fun_bam2bed.py
cfDNApipe/Fun_bamcount.py
cfDNApipe/Fun_bamsort.py
cfDNApipe/Fun_baseRecalibrator.py
cfDNApipe/Fun_bcftoolsVCF.py
cfDNApipe/Fun_bismark.py
cfDNApipe/Fun_bismarkdedup.py
cfDNApipe/Fun_bismarkmethylex.py
cfDNApipe/Fun_bowtie2.py
cfDNApipe/Fun_calcmethyl_v2.py
cfDNApipe/Fun_classcifier.py
cfDNApipe/Fun_cnvHeatmap.py
cfDNApipe/Fun_cnvPlot.py
cfDNApipe/Fun_cnvTable.py
cfDNApipe/Fun_cnvbatch.py
cfDNApipe/Fun_compressmethyl.py
cfDNApipe/Fun_contamination.py
cfDNApipe/Fun_counter.py
cfDNApipe/Fun_createPON.py
cfDNApipe/Fun_dbimport.py
cfDNApipe/Fun_deconv.py
cfDNApipe/Fun_fastqc.py
cfDNApipe/Fun_filterMutectCalls.py
cfDNApipe/Fun_fpcount.py
cfDNApipe/Fun_fpplot.py
cfDNApipe/Fun_fragLen.py
cfDNApipe/Fun_fragLencomp.py
cfDNApipe/Fun_gatherVCF.py
cfDNApipe/Fun_getPileup.py
cfDNApipe/Fun_identifyAdapter.py
cfDNApipe/Fun_inputProcess.py
cfDNApipe/Fun_mutect2n.py
cfDNApipe/Fun_mutect2t.py
cfDNApipe/Fun_qualimap.py
cfDNApipe/Fun_rmDuplicate.py
cfDNApipe/Fun_virusdetect.py
cfDNApipe/Pipeline.py
cfDNApipe/StepBase.py
cfDNApipe/__init__.py
cfDNApipe/cfDNA_utils.py
cfDNApipe/report_generator.py
cfDNApipe/report_generator_comp.py
cfDNApipe.egg-info/PKG-INFO
cfDNApipe.egg-info/SOURCES.txt
cfDNApipe.egg-info/dependency_links.txt
cfDNApipe.egg-info/top_level.txt
cfDNApipe/data/Verdana.ttf
cfDNApipe/data/header_blue.png
cfDNApipe/data/icon_1.png
cfDNApipe/data/icon_2.png
cfDNApipe/data/logo_1.png
cfDNApipe/data/src_href.bz2
test/__init__.py